Microsatellite Instability (MSI) Detection Kit Product Manual
(PCR-Capillary Electrophoresis Method)
試劑 | 規(guī)格 | 成分 |
Reaction Mix(2X) | 160μL×1支 | 含PCR緩沖液 |
Primers Mix | 65μL×1支 | 含檢測位點的引物 |
熱啟動酶 | 13μL×1支 | 5 U/μL |
sdH2O | 500μL×1支 | 超純水 |
Post-amplification Reagent Kit
LIZ-500 | 16μL×1支 | 熒光分子量內(nèi)標 |
Main Equipment Required for the Experiment:
PCR thermal cycler
ABI capillary electrophoresis system (e.g., 3500, 3730)
96-well plate centrifuge
Clean bench
Micropipettes
Refrigerator
Protocol for Using the Reagent Kit (Please gently shake and briefly centrifuge the reagents before use):
Preparation of Genomic DNA
Use a genomic DNA extraction kit to extract genomic DNA from the samples to be tested. For example, the iPure Cell/Blood/Animal Tissue gDNA Extraction Kit (K316-L) from Guangzhou Aijie Biological Technology Co., Ltd.
PCR Amplification
PCR Reaction System (PCR reaction mix is prepared immediately before use, any excess mix can be stored at -20°C for up to one week, avoid repeated freeze-thaw cycles.)
基因組 DNA | 30ng-100ng 基因組 DNA |
Reaction Mix (2X) | 10.0μL |
Primers Mix | 3.0μL |
熱啟動C-Taq酶 | 0.8μL |
sdH2O | 補水至20.0μL |
2.2 PCR Program:
步驟 | 溫度 | 時間 | 循環(huán)數(shù) |
預變 | 95℃ | 5mi |
|
熱循環(huán) | 95℃ | 30s | 30 |
56℃ | 90s |
70℃ | 30s |
終延伸 | 70℃ | 30min |
|
保溫 | 15℃ | ∞ |
|
Capillary Electrophoresis Detection:
After centrifuging the PCR amplification product at 3000rpm for 1 minute, take 1μL of the PCR amplification product and mix it with 1μL of LIZ-500 and 9μL of deionized formamide (deionized formamide needs to be prepared by yourself). After centrifugation of the 96-well plate, perform capillary electrophoresis detection.
Data Analysis:
After importing the panel and bin files, analyze the raw data using GeneMapper, and judge the results according to the microsatellite instability evaluation criteria. (Please contact the company for the Panel and bin files).
Evaluation Criteria:
(1) High Instability (MSI-H): 2 or more mutations appear in 5 molecular markers.
(2) Low Instability (MSI-L): Only 1 mutation appears in 5 molecular markers.
(3) Microsatellite Stable (MSS): No mutation appears in 5 molecular markers.
Peak Chart Example:

圖1:高度不穩(wěn)定(MSI-H)
圖2:微衛(wèi)星穩(wěn)定(MSS)
Sample Requirements:
Sample Type: Human EDTA anticoagulated whole blood.
Sample Storage: Blood samples should be sent for testing as soon as possible after collection; or stored at -20°C ±5°C for up to 24 months. Once genomic DNA is extracted, it should be tested as soon as possible; or stored at 2~8°C for up to 4 weeks; or stored at -20°C ±5°C for up to 24 months, with no more than 5 freeze-thaw cycles.
Sample DNA Quality Requirements: DNA should ensure an OD260/OD280 ratio between 1.6 and 2.0, with a concentration ≥10 ng/μL.
Precautions:
Please read the product manual carefully before use.
The laboratory should have reasonable biosafety facilities and protection procedures. Laboratory management should strictly follow the management specifications of PCR laboratories, and experimental operators should have qualifications related to gene amplification and other relevant experimental operations. PCR-related operations should be strictly conducted in accordance with relevant national regulations for strict zoning. Special instruments and equipment should be used for each stage of the experimental operation, and supplies from different areas and stages should not be cross-used to prevent nucleic acid cross-contamination.
Centrifuge tubes and tips used in experiments should be sterile and free of nucleases.
During the experiment, wear protective clothing, disposable gloves, and masks.
Residual samples, PCR amplification products, contaminated reagents, and consumables during the testing process should be disinfected and handled in accordance with relevant regulations and laws.
Do not mix reagents from different batches when using the kit within the expiration date.
Enzyme mix-related operations should be performed on ice. Other reagents should be completely thawed and mixed evenly before use, and repeated freeze-thaw cycles should be avoided as much as possible.
When adding samples, all liquids should be slowly added to the bottom of the tube, not left on the tube wall, and the PCR tube lid should not be touched directly with hands.
If the sample has quality issues, such as severe degradation or containing PCR inhibitors, the test results may show spurious peaks or loss of target amplification products, affecting result interpretation.
References:
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[10] "NCCN Guidelines colon Cancer Version 3.2017".
[11] "Chinese Guidelines for Diagnosis and Treatment of Colorectal Cancer 2015 Edition".